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Cell type classification with SignacX: CITE-seq PBMCs from 10X Genomics5 years ago
Seurat | SignacX | Visualizations
SignacX 2.2.0Mathew Chamberlain signac-Seurat_CITE-seq.Rmd
SignacX, Seurat and MASC: Analysis of kidney cells from AMP5 years ago
Load data | Seurat | SignacX | Visualizations | Run MASC
SignacX 2.2.0Mathew Chamberlain signac-Seurat_AMP.Rmd
Cell type classification with SignacX: 1k PBMCs from 10X Genomics5 years ago
Seurat | SignacX | Visualizations
SignacX 2.2.0Mathew Chamberlain signac-Seurat_pbmcs.Rmd
Benchmarking SignacFast with single cell flow-sorted data5 years ago
Load data | Seurat | SignacX
SignacX 2.2.0Mathew Chamberlain SignacFast-Seurat_AMP_RA.Rmd
Benchmarking SignacX and SingleR with synovial flow cytometry data5 years ago
Load data | SingleR | Seurat | SignacX | Compare SignacX and SingleR with FACs labels
SignacX 2.2.0Mathew Chamberlain signac-Seurat_AMP_RA.Rmd
Learning CD56 NK cells from CITE-seq PBMCs5 years ago
Load data | SignacX | Classify a new data set with the model
SignacX 2.2.0Mathew Chamberlain signac-SPRING_Learning.Rmd
Mapping homologous gene symbols5 years ago
Load the essential packages | Load Macaca fascicularis genes | Map homologous genes
SignacX 2.2.0Mathew Chamberlain Crabeating_vignette.Rmd